Softberry | Tool name | Softberry |
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| URL | http://linux1.softberry.com/berry.phtml |
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| Important features | 1) Pattern based human gene structure prediction (multiple genes, both chains). 2) Find splice sites in genomic DNA using weight matrices. 3) BESTORF program analyses EST/mRNA sequences to predict potential coding fragments. 4) FGENE-SH is human gene prediction that allows to predict genes containing minor variants of donor splice sites (GC sites). 5) Looks for Pattern-based human multiple variants (alternative splicing) of potential genes in genomic DNA. 6) Finding potential 5'-, internal and 3'-coding exons. 7) Rna SPL is used for For exon-exon junctions positions in human cDNA. |
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| Citations | Not available |
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| Year of publication | Not available |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | Species, Finds alternative splicing in human, Finds alternative splicing in mouse, Finds alternative splicing in chicken, Finds alternative splicing in Arabidopsis, Finds alternative splicing in Drosophila, Finds alternative splicing in other species |
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| Category | |
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| Input file format | nucleotide sequence in FASTA format |
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| Output file format | |
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| Limitation | |
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